rs50397678 SNP Detail

Summary

• ID
  rs50397678
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86169218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGAGGCC CTTGGTCTTG TGAAGGGTCG ATGCCCCAGT
  GTAGGGGAAT GCCAGGGCCT GGAAGCGGGA GTGGGTGGGT TGGTGAGCAG GAGGATGGGG
  A
  AGAGGAGAGG GTTTTTGGAG GGAGACCAGG AAAGGGGATA ACATTTGAAA TGTAAATAAA
  GAAAATATCA AATTTAAAAA AAAGTGAAGT CTGAATCAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135445603	ENSMUSSNP3526995	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320829434	CHEV_3_86065833	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50397678					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86169218 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	1331 bp downstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	1542 bp upstream