rs50398920 SNP Detail

Summary

• ID
  rs50398920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5536591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTAGTTAC AACACTGGCT
  TTACTGTCTT CTCTTAGGTT GGGAAAAGCA CAGGGATTCT TCTTTTTCAT TTTTCTGTAA
  AGGAAAGAGG ACAAATAGCT ACAAAGTATC CTATGCAGAT CACAGTGGAT ATGCAAGACA
  TTCTTAGTAA TAACTGATAT CCTCACGACT ATGAGCCTAT CTACTCCTAA GCAAGGTATA
  R
  CTTCCTGTGT TTAAGTCTTT CAGATACTTT ATGATTTTCC TCATAGGCCA TCTTGTGATG
  CCTTATTTAG TGACTGACAT CATATTTTCC TTCCTATTTC ATGATCCTCT GCCCAGTTTT
  CTATTCAATC ACATTTTCAA ACTGGTTTTG TTTAATGTAC AAGCTTTGTA TGAAACTTTG
  GCAACAACCA AATTTGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145954788	ENSMUSSNP3092789	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50398920					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5536591 () rs orientation: forward

Symbol	Name	Function Class
Tssr36375	transcription start site region 36375	230 bp upstream