rs50399120 SNP Detail

Summary

• ID
  rs50399120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51361163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGAGAAAG AGAAAAGGAA GAAACAAAAT TAGGGGGAAA
  TCACATTGTT TGAGTAGAGC TAGGATGAAG AGAAACTATG TGATAGGAAG AACCAACAAA
  R
  CAGGGAGATG AGATTTAAAG AAAGAGTGAG GAATCACAAA GTGTTGAGGA AAAGTGTGTT
  TTAAACAGAT ATGAAAAAAT AACTAAAGTT ACGAAATAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52289016	NES15304950	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50399120					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289016	NES15304950	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51361163 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93245	transcription start site region 93245	1647 bp downstream
Tssr93246	transcription start site region 93246	1462 bp downstream
Tssr93247	transcription start site region 93247	1419 bp downstream
Tssr93248	transcription start site region 93248	1378 bp downstream
Tssr93249	transcription start site region 93249	1212 bp downstream
Tssr93250	transcription start site region 93250	751 bp downstream
Tssr93251	transcription start site region 93251	690 bp downstream
Tssr93252	transcription start site region 93252	595 bp downstream
Tssr93253	transcription start site region 93253	399 bp downstream
Tssr93254	transcription start site region 93254	266 bp downstream
Tssr93255	transcription start site region 93255	48 bp downstream
Tssr93256	transcription start site region 93256	45 bp upstream
Tssr93257	transcription start site region 93257	408 bp upstream
Tssr93258	transcription start site region 93258	643 bp upstream
Tssr93259	transcription start site region 93259	685 bp upstream
Tssr97554	transcription start site region 97554	682 bp downstream
Tssr97555	transcription start site region 97555	1244 bp downstream