rs50399209 SNP Detail

Summary

• ID
  rs50399209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100978267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC AAAAGCCTTC CAGGGCCAGG
  M
  TGAGAGGAGA GCTTGCTCAT GCCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148482184	ENSMUSSNP2693577	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss325085179	CHEV_15_100910817	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50399209					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100978267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	856 bp distal
Fignl2	fidgetin-like 2	1819 bp upstream
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	341 bp downstream
Rr509899	regulatory region 509899	1830 bp distal
Rr509900	regulatory region 509900	1329 bp distal
Rr509901	regulatory region 509901	1278 bp distal
Rr509902	regulatory region 509902	1460 bp proximal
Tssr136515	transcription start site region 136515	1967 bp upstream
Tssr136516	transcription start site region 136516	1873 bp upstream
Tssr136517	transcription start site region 136517	1556 bp upstream
Tssr136518	transcription start site region 136518	1454 bp upstream