rs50399398 SNP Detail

Summary

• ID
  rs50399398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123503067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGTTCC AGAAGCACTA
  GGGCGCTCAG AGAACAGGCT GCTGTCCTGA GCCCTCAGGC CTGGCTCTCA AGGAAGCCTC
  GAGCCTGGGC ATGCCTCTGC CAGCAAATGG GCATCGTGGT CCTCTGAATC AATCCCTGGT
  GACTGCCTGC CTTGGGAGTG GTAAACCAAC CTACCCTCCC TCTCATCTGC AGCGCCCAGT
  R
  CATGTGGAAA ACAAGCTGCC GCAGAGGCAG AGACAGCGAG AAGGCAGACT TGTTAGTTTA
  GCTCTCTGTT ACAGCAAACA AATCGATTAT GAAATAGAAT ACAGAATTAC ATGGTTGGTT
  TGTACACCCC CCCCCCCCCC CCCCGCCTTT TCCTCTTTGC TAGCAGAGTA TCATGTAGCA
  GCAGCAAAGG CTGGTCTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60834530	NES16021150	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50399398					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834530	NES16021150	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123503067 () rs orientation: forward

Symbol	Name	Function Class
5830487J09Rik	RIKEN cDNA 5830487J09 gene	1468 bp upstream
Bcl7a	B cell CLL/lymphoma 7A	within coordinates
Rr378576	regulatory region 378576	within coordinates
Rr620178	regulatory region 620178	within coordinates