rs50400367 SNP Detail

Summary

• ID
  rs50400367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80077314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGGGT GAGGGGGGGT
  GGGAGTGGGC GTGGTCCTTT AGGCTCTCCG CCCTGAGAAT GGACAGAGGA GGAAGGTCTG
  AGGTTGACTA CCTGCACTTT GGCCTTGACA GCTCCAGGAA GGGAAAATGC AGGTGCTTCC
  TGCCTCACCC AGTACCTGGC TCCTCTGAGA GCTGGGGCTG CCCCTCCAGC TGCCTGGTCA
  Y
  GTATTTTACA TTTGAGGAGA CCTGAGGCCT GGAACGAGGT GGCTCTAGGA AGCCATTCCA
  GGTAGATAGC TGTGTTGGCA TGGACCTGCC TGAGATCAGC TCATAGCCAC ACAACTGACA
  GACCTGGTTT GGCCTGGGGC ACGGAGGAAA GAATCGGTGG CTACAAAAGC CAGAAGCTGG
  GACTGAACTG GGGGCCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569450	NES17022408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50400367					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569450	NES17022408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80077314 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505908	regulatory region 505908	968 bp distal
Rr505909	regulatory region 505909	101 bp distal
Rr505910	regulatory region 505910	within coordinates
Tssr4660	transcription start site region 4660	within coordinates
Tssr132185	transcription start site region 132185	1235 bp downstream
Tssr132186	transcription start site region 132186	931 bp downstream
Tssr132187	transcription start site region 132187	99 bp downstream
Tssr132188	transcription start site region 132188	43 bp downstream
Tssr132189	transcription start site region 132189	28 bp downstream