rs50401089 SNP Detail

Summary

• ID
  rs50401089
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT TTAAAAGGTA GCGGTACTCT
  C
  TAGAGGGCAA GCGCCTTAGC TGGAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145532357	ENSMUSSNP3574399	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319989532	CHEV_1_137270631	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50401089					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	382 bp proximal
Shisa4	shisa family member 4	within coordinates
Tssr13841	transcription start site region 13841	1722 bp upstream
Tssr13842	transcription start site region 13842	844 bp upstream
Tssr13843	transcription start site region 13843	633 bp upstream
Tssr13844	transcription start site region 13844	599 bp upstream
Tssr13845	transcription start site region 13845	571 bp upstream
Tssr13846	transcription start site region 13846	90 bp upstream
Tssr13847	transcription start site region 13847	365 bp downstream
Tssr13848	transcription start site region 13848	865 bp downstream
Tssr13849	transcription start site region 13849	882 bp downstream
Tssr13850	transcription start site region 13850	901 bp downstream
Tssr13851	transcription start site region 13851	1045 bp downstream
Tssr13852	transcription start site region 13852	1169 bp downstream
Tssr13853	transcription start site region 13853	1179 bp downstream
Tssr13854	transcription start site region 13854	1196 bp downstream
Tssr13855	transcription start site region 13855	1214 bp downstream
Tssr13856	transcription start site region 13856	1228 bp downstream