rs50401550 SNP Detail

Summary

• ID
  rs50401550
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3956749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACATCCT TCTACCTGAA
  AGTTGCTCCC CCTGAAAGAG TCCCAGGCTT GGAAGACTTG AGGGGCAAGC TAGCCACAGC
  TGCTGCCTCT AGTCCTGTTA GCCTGAATAG ACCAAGAACA CCCAAGTGCC CTCTTAGTGA
  GAAGGGAAGC AGGGGTCAGT CAGCCATTTC CTCAGCAAAT GATGGTGACT CATTCCTCTG
  M
  CTCTTCATCT TCTAGTTCAG CAAAGTGAGG ACCATTACCA CCAGGTCAAA CTCTATAAAG
  CAGGGCAAAG ACCAGCATTT CCCCGTCTTC ATGAACGAGA AGGAGGACAT CCTGTGGTGC
  ACTGAAATGG AAAGGTAGAG TGCTGGGTGC TTGCGTCTGG CCAGGGCTGG GTTAAAAGGA
  AGGCGGCAGG CTCCTCATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61337428	NES16942752	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50401550					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337428	NES16942752	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3956749 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3a	DNA methyltransferase 3A	within coordinates
Tssr112533	transcription start site region 112533	1396 bp downstream
Tssr112534	transcription start site region 112534	59 bp upstream
Tssr112535	transcription start site region 112535	853 bp upstream
Tssr112536	transcription start site region 112536	924 bp upstream
Tssr112537	transcription start site region 112537	997 bp upstream
Tssr112538	transcription start site region 112538	1471 bp upstream
Tssr115622	transcription start site region 115622	1086 bp downstream