rs50401720 SNP Detail

Summary

• ID
  rs50401720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80140075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA GCGCTACTGC TGCCCCTTCG
  Y
  CCTGTCTTAG CTTAATCATC TCGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148216298	ENSMUSSNP1215265	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325030588	CHEV_15_80086304	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50401720					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80140075 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	within coordinates
Cpgi7369	CpG island 7369	within coordinates
Gm56706	predicted gene, 56706	879 bp upstream
Rr505931	regulatory region 505931	890 bp distal
Rr505932	regulatory region 505932	887 bp distal
Rr505933	regulatory region 505933	680 bp distal
Rr505934	regulatory region 505934	1969 bp proximal
Tssr132199	transcription start site region 132199	693 bp downstream
Tssr132200	transcription start site region 132200	611 bp downstream
Tssr132201	transcription start site region 132201	553 bp downstream
Tssr132202	transcription start site region 132202	363 bp downstream
Tssr132203	transcription start site region 132203	143 bp upstream
Tssr132204	transcription start site region 132204	463 bp upstream
Tssr132205	transcription start site region 132205	1030 bp upstream
Tssr132206	transcription start site region 132206	1208 bp upstream
Tssr132207	transcription start site region 132207	1291 bp upstream
Tssr135431	transcription start site region 135431	874 bp upstream
Tssr135432	transcription start site region 135432	856 bp upstream
Tssr135433	transcription start site region 135433	10 bp upstream
Tssr135434	transcription start site region 135434	1659 bp downstream