rs50402226 SNP Detail

Summary

• ID
  rs50402226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:53625928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGTATGTC TGCTCCATGT CTGGTTAACT TCCAGTTGTC
  TAGTCTTTAT AGTGGGGTGA ACTTCATGGG GCTGCCTGTA TATTTTGAAG GCCAGCAAAA
  Y
  CACATTTCAA TACTCATTTA AAGTGGATCC CAGCCCGGTG TGGTGGTGCA CACCAGTTAT
  TCTAGTACTT AGGTGGTGGA GTAAGATGAC GAGTTCAAGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	PWD/PhJ
ss61805339	NES17735903	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	PWD/PhJ
rs50402226					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805339	NES17735903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53625928 () rs orientation: forward

Symbol	Name	Function Class
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	Intron
Rr480054	regulatory region 480054	1594 bp distal
Rr480055	regulatory region 480055	1172 bp proximal
Rr480056	regulatory region 480056	1944 bp proximal
Tssr122586	transcription start site region 122586	820 bp downstream
Tssr122587	transcription start site region 122587	843 bp downstream
Tssr122588	transcription start site region 122588	908 bp downstream
Tssr122589	transcription start site region 122589	930 bp downstream