rs50402322 SNP Detail

Summary

• ID
  rs50402322
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121213145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAAGGT TTCGTATTAA
  TTACTACTGT TGTTCCCGTA ATCCCGGGGA ATTAAAAACC AATAAAAGAG TGACAACACA
  AACTGATAGT TTAGGGTCTT TTAAAAATAG TTTTTATTCG TTTCCCTGAA GTACAGCTAG
  AGCTTGTGAG GGGTCGGGAA GTTGGGCGGG GGCTGGGAGT GGGGTATGTG TGTGAGCGGC
  K
  CCTGGTCCCT TCTCCTTCAC CTAGCCCAAG AGTGCGGGCA GGTGATGGAT GCTATGACCC
  TAGACCCCCG AGTCCGGCCT GTGTGTCCTC GCCTCGCAGG CAGCCCCGGA AACAAAGGGC
  GGCAGCCTAG GGCTTGACGC GACCTCTGGG GTCATGCGTA GCAGAGCGGC TAGAGGCCAG
  CAGCGGCGCC TTCCTGCTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376271963	MGP_WTSI_8_123010306	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	T	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50402322					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	T	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376271963	MGP_WTSI_8_123010306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121213145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21144	CpG island 21144	68 bp proximal
Gm51556	predicted gene, 51556	871 bp downstream
Gm63872	predicted gene, 63872	1274 bp upstream
Gse1	genetic suppressor element 1, coiled-coil protein	Intron
Rr401178	regulatory region 401178	497 bp upstream
Rr671531	regulatory region 671531	217 bp distal
Rr671532	regulatory region 671532	243 bp proximal
Rr671533	regulatory region 671533	296 bp proximal
Rr671534	regulatory region 671534	784 bp proximal
Rr671535	regulatory region 671535	1551 bp proximal
Rr671536	regulatory region 671536	1643 bp proximal
Rr671537	regulatory region 671537	2000 bp proximal
Tssr79753	transcription start site region 79753	742 bp upstream
Tssr79754	transcription start site region 79754	1208 bp upstream
Tssr79755	transcription start site region 79755	1246 bp upstream
Tssr79756	transcription start site region 79756	1773 bp upstream
Tssr79757	transcription start site region 79757	1800 bp upstream
Tssr79758	transcription start site region 79758	1826 bp upstream