rs50403573 SNP Detail

Summary

• ID
  rs50403573
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97445114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATACTGA CAAACCTGAA
  GATCTGAGAT TGATCCTTGG TACCTACATG GTAAAATTAG TGAAAGGACT CAGCATTGTT
  CAATGATTTC CACACATATG CTGTGATATG CATGTACTTA CATACAGCAC ACAGCACACA
  CACATACAAA CACAATAAAT AAATGTAAAG AAAAAGGGTA GAACTAATCT ATTGAAACAG
  W
  ATGTTAGCTA TTACCCTCAC ATGTGTGACT CCAATCTAGC CTAGCTTTTT ACCAAGATAC
  AAGTACTACT CATAATCTAT CATTCAGATA ATTAATATTC ATAGATCTTC CTGTTTGCTG
  CTGTAAAGTC TCCTCTTTGT TAATTGCAGT TCTTCAAACC TATCGTTGGT CTCCAAAAAT
  GCATGTAAGG TACATGGTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss61682498	NES17633356	PERLEGEN	MM_PANEL2	f	SNP	A	T		T
ss324130783	CHEV_12_98717065	CHEVERUD	SCREENING_POP	f	SNP			T		A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs50403573					SNP	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61682498	NES17633356	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97445114 () rs orientation: forward

Symbol	Name	Function Class
Rr387670	regulatory region 387670	727 bp upstream
Rr470847	regulatory region 470847	1663 bp distal