rs50404052 SNP Detail

Summary

• ID
  rs50404052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:40530365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGAGAG AGGGGAAATG CAAAAATCCA TTTCTGGTCT
  GAAGAAATCC ATTTTTGATT GTCAAAACCC AAATCAGTGA TTGAGTCACT TCTAAATGAT
  Y
  ATTCCCCCTT TGAAATCCTC AGTCAAACAT AAGTTCATAA TTCTGTCATA TATACTTGGC
  AGAAGATAGT CTGAGGCGGG ATAGTATTGG GAACTTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149000215	ENSMUSSNP3852078	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50404052					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:40530365 () rs orientation: forward

Symbol	Name	Function Class
A230077H06Rik	RIKEN cDNA A230077H06 gene	within coordinates
Gm25784	predicted gene, 25784	1203 bp downstream
Gm28307	predicted gene 28307	within coordinates