rs50404099 SNP Detail

Summary

• ID
  rs50404099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53935159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCATCAA TCAATCAATC
  AATCAAACTT GGATTCCTGT TATATAACAA TGAGGAAATT TTAGAATGCA GGAAACACAC
  ATAGATACTC TAGTGTACTC GGTGTCCCCA AGGATTTGTG AAATACTTCA GAATGGAGTG
  CAGGACATAG GCTTCCCCGA AGGTAGACAC AAGAGCCTTC CCTACCTGAC AGGTTTGTTT
  K
  CCTGCCTCAC CCAGCCTGTG AGCATTCCAT CTGCCCAAAT CCCCCAGTGT TTTGGGAAAT
  ACCACACACA GTATGGTGAT GCATCAGACC TGGAATCAAT CAAAGGCACT GCTTCCTGAA
  ATGGCCTTCG AGCAAGTCCA TGGGAAAGGC TGACAGCTAT GCTAACCAAT CATGTACCTT
  GACAGCTTTA CTCCCTCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52308068	NES15297397	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	T	T	T	G		T	T	T	T
ss147113973	ENSMUSSNP316519	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50404099					SNP	T	T	T	T	T	T	T	G	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52308068	NES15297397	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53935159 () rs orientation: forward

Symbol	Name	Function Class
Man1a	mannosidase 1, alpha	within coordinates
Rr215194	regulatory region 215194	442 bp proximal
Rr222944	regulatory region 222944	1724 bp distal
Rr227916	regulatory region 227916	within coordinates