rs50404814 SNP Detail

Summary

• ID
  rs50404814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACCCAGA ACTGCAATTC
  AGTGCTGGAG CTCACCAGTG AGAAGCATCT AAGAGAAGCT TGGGAGAACA CCCAGCTCTC
  TCTCTCCGGC TCACAGGTCT GTTCGTTGGG AAGCACATGA AGGTCTGGGC ACACAGGAGG
  CTTAGTCAGA ACAGCTTGCT GAAGACAGAT CAAGGCCCTG CTCCACCATG GTGGCAGGCG
  R
  GGAGGATGGA AGGCCGGGGG CTGCCGGCTG TTGGCAAGAC TGTGCCAAAG CTTTCCTGAG
  TGGAGCAGGG CAGGGCTGGA GGAGGGGAAG GGTCCATGAC GATCTCACAG CTCGGGAGAG
  GAAGGTGTTT GCCCCATCCA GGTCACCCCA AGGCTTAGAG CCAAGACCCC AGTCTCCTAA
  TTTCCAATCA CAAACCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148233501	ENSMUSSNP4864987	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50404814					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1857 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	829 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	831 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	156 bp downstream
Tssr21689	transcription start site region 21689	510 bp upstream
Tssr21690	transcription start site region 21690	1000 bp upstream