rs50404844 SNP Detail

Summary

• ID
  rs50404844
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60056820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTCAG GAAGAATTTC
  TGAAATATGA AAGGGTGAGT TGAGGAGGAA GAAATAGAAT TTTCATGTCC GTAATAAGAG
  ATGAGCAAAG TCTATAGAAA TATACTGAGT GACAAATAAC TAGAGCCAAA GATATTCCTT
  TCACTGAAAA AAATAGAGGA TCAAAGCACT ACTGCCATTG GAGAGAAATT CTTTAGCCAC
  W
  CATCAGTCAA CCTGTCCTCC ATGATTAATT CTTATTCTCC TTAATCTTTG ATGAGCAGTC
  ATGTACCTAC AGTATCTTTT CAACTACAGA GGTGTGGGAA TCTCAACTCT TACATTGCTA
  TGGCCCATGA TAATTTATGA AGCACCATCA GAGGCTTCTG GCATGATCTT TTTCTGTGGG
  TATCTGGGAT AGTTCTATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147991171	ENSMUSSNP700350	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50404844					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60056820 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1846 bp upstream
Tssr134460	transcription start site region 134460	1915 bp downstream