rs50404865 SNP Detail

Summary

• ID
  rs50404865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32449965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGAAGG AGTAGTAACC
  TTTCTCACTC TGATCCCCAA TTCAAAAAGA GTAAGTGGGA TAAGGATTGT CCACTCCCAT
  TGCAGTGACC TCCCACCCTC AAACAGAAAC AAAACAAAAA CGTCAATCAA TCAATCAATC
  AATCAGTCAA TAGGAAAATG AACAAGACTC ATTTCCTTGC TGCCCCTGAA GCAAGGAAAT
  R
  AGTCTTAGTG ATTTCCCTTA TAAGTATGGG GGTAACCTAT TTAGTCCCTT GGTGAATTCT
  CCCTTTAATG TCATCCTTAC TAGGCCTCAA CTATCTATGG TCCACAATAT CACTACTGCC
  ATCCTTGTTA CCTTCAGACT TTTTACTTGC TATATCTGCT AAAAGCACAC ACACAGAGTG
  ACAGAGACAG CTGCAAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss145472276	ENSMUSSNP6059058	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs50404865					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32449965 () rs orientation: forward

Symbol	Name	Function Class
Brd4	bromodomain containing 4	within coordinates
Tssr147356	transcription start site region 147356	1523 bp upstream
Tssr147357	transcription start site region 147357	1376 bp upstream
Tssr147358	transcription start site region 147358	1337 bp upstream