rs50405226 SNP Detail

Summary

• ID
  rs50405226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCTCTG TGTTTCTTGC
  TGGGAGCTCC CAGCCACTGC GTCTGCTCTG CCATGGTGGA CTCTCATCCC TCTGGGACCA
  TAAACCCAAA TAATAATTTT TATTTTTATT TATTATTATT ATTATTATTA TTATTATTAT
  TATTATTATT ATTATTTTCG AGACAGGGTT TCTCTATATA GCCCTGGCTG TCCTGGAACT
  Y
  ATTTTGTAGA CCAGGCTGAC CTCGAACTTA GAAATCCGCC TGTCTCTGCC TCCCGAGTGC
  TGGGATTAAA GGCATGCGTC ACCACTCCTG GCCAAATAAT AAATTTATAA GTTTATTTAT
  TAATGAATAT TATTATGCAT AGATTTATCA CAGCCATGGA GAAGTAGCTT AAAACACCCA
  CATCTCGGAG TTTTAGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148084626	ENSMUSSNP4676617	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321435532	CHEV_4_152022471	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50405226					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	1126 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	219 bp distal
Rr93365	regulatory region 93365	819 bp distal
Rr97434	regulatory region 97434	170 bp distal