rs50405547 SNP Detail

Summary

• ID
  rs50405547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107179483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTATAT AAGGATGTCA
  ATTACATAAG GTTAATGCCC ACACTAATGT CTTCTTCATT TTAACTTGAT TGCCATCTAT
  AAAGGCCCTG TCTGCAAACA TGCCCACAAT CTAAGGCACT TGATTTTGGA TCCTCACATG
  CGAATATGGG GGGAGATTAA CATTTAACTT AAAACAGTGA CTCCCTCTGA AGCAGATTTA
  R
  CTACAGTTCA ATAGCATCTG GCAGCATGCT AGAGATGCTT GGAATATCGA ATTCCATGTC
  AAAAAGAGGT TTATGTTGTA AAGTAGACAC CTCTCCTCTC TGGACCTCAT ATGTCATATC
  GAGAGTAAGA GGTGTGCACT GGGTCTCCAC CACCTCTGCA CCTGAATTCC AGGACCGTGT
  TCTAGGCAGA GTCGGGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320865137	CHEV_3_107075085	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50405547					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107179483 () rs orientation: forward

Symbol	Name	Function Class
Rr582951	regulatory region 582951	1602 bp proximal
Rr582952	regulatory region 582952	1856 bp proximal