rs50406105 SNP Detail

Summary

• ID
  rs50406105
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145656208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTGGAG GCAGCCTGAG
  CTACCCCGAG AAGAGAGTAC AGGCACTTCT CCCCGCTCCT ACAGAAGGAT GCCACCTGCT
  CATCCCGGTT TGAAGGGCTG AGGAAATCTC TCAGCCCCAG CTCCTGATAG AGTCTGTCTG
  AGGGTTAAAA AGCAGTGCCC AAGAGAGGAT CTCTCAGGAG GAGTAACAGG ACCCAGTCTC
  T
  CTCCTAGCCA GGGAATCACA TTTCAGTCGC CTCCGAGCTG GCCGCATCTG TCACACCTGC
  CTAATTGGCT TATGACATCT GCAGAGCGCA GGAGAGCCTT GCATTTCATA TGGGAAGCAG
  CTGGGGCACT GTGAGTCTGA GGCCAGCTTG AGCTAGAGGG CAGGTTCCAG GCCAGCATGC
  GCAACAGAGT GAAACTGTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136040867	ENSMUSSNP2142379	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321009186	CHEV_3_145613417	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50406105					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145656208 () rs orientation: forward

Symbol	Name	Function Class
Rr586881	regulatory region 586881	within coordinates
Rr586882	regulatory region 586882	827 bp proximal