rs50406265 SNP Detail

Summary

• ID
  rs50406265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31216298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGCCTC ATCAAGCTAG
  ATCGTTCTTT ATTATTTCTA GAGCTTGGAT TCTAAACGAG TCCAAGACTC GGGGAGAGGT
  TCCCGGAGGG CTCTTTAAGG CTCCGGGGTC AATTCACTTA ACACTCCCGA GATGCTGACT
  CTGCCCAACA CCCTGCCGGG GTCTGGAGAG GTCATAAAGA CCAAGACAGT CTCTACTGCA
  Y
  AGAGCTTACT ACACTCAGAG ACCAGAACTC TCACGGACCG GACTCCCAAT TCAAATCAGA
  TGAGCCAAGT ACTACAAGAA ATAGGTTTAC TTAGGGCAAA GGGACGCATC CACGAGTTGA
  CTGAGAAAAT GTGAGAAAAA AAAATTCTCA TCAACGTTCA GTGCCCGTGG GAAACGTGAC
  TTCAAAACAA CGGCAACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709811	NES15559254	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50406265					SNP	C	T	T	T	C	T	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709811	NES15559254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31216298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	82 bp proximal
Eaf1	ELL associated factor 1	738 bp upstream
Gm63056	predicted gene, 63056	75 bp upstream
Mettl6	methyltransferase 6, methylcytidine	within coordinates
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	7 bp upstream
Tssr124944	transcription start site region 124944	724 bp upstream
Tssr124945	transcription start site region 124945	756 bp upstream
Tssr127965	transcription start site region 127965	76 bp upstream
Tssr127966	transcription start site region 127966	619 bp downstream
Tssr127967	transcription start site region 127967	651 bp downstream