rs50407782 SNP Detail

Summary

• ID
  rs50407782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99770797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAG TGAGAGGCCA GCCAGGGCTG
  R
  TGTAGGGGGA AGTTGGAGCG AGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145524298	ENSMUSSNP2825508	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50407782					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99770797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	within coordinates
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	88 bp upstream
Rr400466	regulatory region 400466	within coordinates
Rr652064	regulatory region 652064	135 bp distal
Rr652065	regulatory region 652065	within coordinates
Rr652066	regulatory region 652066	1954 bp proximal
Tssr73730	transcription start site region 73730	1041 bp upstream
Tssr73731	transcription start site region 73731	496 bp upstream
Tssr73732	transcription start site region 73732	148 bp upstream
Tssr73733	transcription start site region 73733	79 bp upstream
Tssr73734	transcription start site region 73734	66 bp upstream