rs50408463 SNP Detail

Summary

• ID
  rs50408463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97939003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAGAAT TATTCCCTAG
  GGCTTGGTGC TAAGTTCCTA TAAATCCTTA CATATTTAAA CAGCAACTGC CACAGAACTA
  AATGTAAGCT CTATCATTGG AAAGCTCCAA CCTGGAACTT CAAAATAACA AAAATTAGTT
  CCCAAGCTTG CCTTGTCCAA TACGGAAGAA AGATAAAGAT GGGGAATGGA CAGCAGCTAT
  Y
  TAAGCACAGT CAGCTCTACT GTTTGATCAT AATCAGCACA TGCATGTTTA CTCATGTTTC
  ACTTAGTAAA GGTAGTAGTA ATGCCATGCA TCTATTTTAT AAGTAGTCCC TGTATAGCTA
  AATACCCAAC TATGCATACT CTCCCTAAAG ATCTGATACA ATGCATTATG TGTCAATTTA
  TCTACTTGTC AGTATAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61683907	NES17636578	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss137982481	ENSMUSSNP4630217	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50408463					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61683907	NES17636578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97939003 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	1398 bp proximal
Rr269010	regulatory region 269010	1163 bp proximal