rs50410152 SNP Detail

Summary

• ID
  rs50410152
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13426840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTCTTA CAATACAGAA
  AAAATATGAA CTCTTACAAA TAAAACTAGG TAAGTTCAAC TCTTTTTTTT TTTTTTTTTT
  TTCGAGACAG GGTTTCTCTG TGTAGCCCTG GCTGTCCTGG AACTCACTCT GAAGACCAGG
  CTGGCCTCAA ACTCAGAAAT TTACCTGCCT CTGCCTTCCA AGTGCTGGGA TTAAAGGTGT
  A
  CACCATCACT GCCCCGCTCA GGTTCAACTC TTTTTTTTTA TTTTCTGAGA CAGTGTTTCT
  CTGTATAGCC CTGGCTGTCC TGGAACTCAC TTTGTAGACC AGGCTGGCCT CGAACTCAGA
  AATCCGCCTG TCTCTGCCTC CGGAGTGCTG GGATTAAAGG CGTGCACCAC CACACCCGGC
  CAGATTCAAC TCTTTTAAGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822572	ENSMUSSNP2896171	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50410152					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13426840 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1811 bp upstream
Cpgi1315	CpG island 1315	1755 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1843 bp upstream
Rr427802	regulatory region 427802	1471 bp proximal
Rr427803	regulatory region 427803	1732 bp proximal
Rr427804	regulatory region 427804	1809 bp proximal
Tssr96771	transcription start site region 96771	1759 bp downstream
Tssr96772	transcription start site region 96772	1903 bp downstream
Tssr96773	transcription start site region 96773	1967 bp downstream