rs50412000 SNP Detail

Summary

• ID
  rs50412000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152917421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGGCTTT TCTTAAGATG TAAGTagctg
  gggagaggtg gtgcatacct ttaatcctag cacttgggag acagaggcag gcagatttct
  gagtttgagt ccagcctagt ctacagtgtg agttccagga cagccagggc taaatagtga
  R
  accctgtctc aaaaatcaaa CCAAAACAAA GACATAAGTA AGATTATACC ACTTGCTTTT
  TCTTTATTAC TTAACAACTT cacacacaca cacacacaca cacacacGCT ACCTCCCAGA
  GACCATCCAA CATAAACGGT GCCTGTTGAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145736645	ENSMUSSNP1793183	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320070059	CHEV_1_154888800	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50412000					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152917421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			860 bp distal
Rr420582	regulatory region 420582			1297 bp distal
Rr420583	regulatory region 420583			1118 bp distal