rs50412038 SNP Detail

Summary

• ID
  rs50412038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:131665177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGAAAA CTGAGAGGGA
  GAGAAATTAC CATAATTTTA TTGTTTATAG ACATAACCTG AGTATACAAA TAAAAACTAA
  TTAGATATAG AAGAAATATA ATCATTTTAC TCTAGAATAT TTATTTAATG TTTAATTAAC
  ATGTAAGCTC CTTTGTAGGT ATGACAAGTT TCAGAATAAG AAAAAAGTGG TATTTGTGAA
  Y
  AATTGTACTT ACTGATAAAT TTCATAAAGA TTTTAAAAAT AAAGCACATT ATGATTTTAA
  CAGTTTCAAG CTTACACTAC AATGCTCTTC TCTTTCTTTT CCTTTTCTGT ACAATTTTCT
  ATGTACTTCC ATGTCTCGTG TATATATGTC TTGTGTCCTA AAATTGTACT CTTTTCATCA
  GTAAGGTCTT ATAAAATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60948231	NES16180336	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50412038					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60948231	NES16180336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:131665177 () rs orientation: forward

Symbol	Name	Function Class
Tas2r105	taste receptor, type 2, member 105	751 bp upstream
Tas2r114	taste receptor, type 2, member 114	920 bp downstream