rs50412381 SNP Detail

Summary

• ID
  rs50412381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126934367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTAAAT GAATATATTT
  CCTCAAATGC TGTACCAAAT AGAACCAAAA TTATCAACTC TGCTTCTCTT CTTCTGTATT
  AGGGTTGGGT TTTTTGTTTT GTTTTATGTT TTGTTTTCTG CAATAAAGCA CCCTAAAGAA
  AGCAGCTTAT GGGGAAAGGT TTGTGTGTTC ACTTCCTCCC ACTGCGGCCC CATGTCCTGG
  S
  CTTTGGCTGT GGTACTGGTC TTGGGGTCCA GCTGTAGTCC CGCATCCTCC ATTTCCTCTC
  AGCGAGTCCA GGTGCTGTTG CACACCAGGC TGGAGGGATG AAGTCTGGAA TGTGTAGGGT
  CTGCAGAACC ACCTGATAGT GCCGGCCAGG AGAAGGCCTT CTCAGAGGGT CTTAGTGTTG
  CAGCTCATTT AGATGATACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145879584	ENSMUSSNP5650891	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50412381					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126934367 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	57 bp downstream
Tssr69201	transcription start site region 69201	1614 bp downstream
Tssr69202	transcription start site region 69202	1570 bp downstream
Tssr69203	transcription start site region 69203	1528 bp downstream
Tssr69204	transcription start site region 69204	1360 bp downstream
Tssr69205	transcription start site region 69205	447 bp downstream
Tssr74988	transcription start site region 74988	56 bp upstream