rs50413291 SNP Detail

Summary

• ID
  rs50413291
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29264384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAATCTC CCACCAGGTC
  ACTTGAGCCT CACAGGTGGG CCCTTGTCAT ATATGTTGAA ATTAAGGCTC AGGGCCAAAC
  TCCTAGTGGT ATGTGGGGAA CCATTGACTT GCATAACTTG TTTCAGCTAC AGAGCCTAAA
  GCCATGTGCA CAGAAACACA CAGGCAGAAG TGCCCAGTGT GAACCAATTC CAGCTCTGAT
  K
  CTTTGCTCAG GGTCTAGTGA GTGAGGAGGA AACCATAGGG ATGGCTAGAG CAAGCTAGAA
  TGTGTAGAGA AAGACCTTTA ATCCCAGCAC TTGGAAGCAG AGGCAGGTGA ATCTAAGGTT
  CCAGGCTAAG CTAGCCAAGT AAGTTCTAGA CAGCCAAGGC TACCCAGAAA CCCTGTCCCA
  TAACATTATA CGTCCTGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559307	NES16575695	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50413291					SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559307	NES16575695	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29264384 () rs orientation: forward

Symbol	Name	Function Class
Tssr143492	transcription start site region 143492	1805 bp upstream