rs50414598 SNP Detail

Summary

• ID
  rs50414598
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129309724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA TCAGGGTCTT TCTTTAGCCC
  T
  TTTACCACAC AGAGATGGTT GCTGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133654603	ENSMUSSNP501160	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321948815	CHEV_6_129282779	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50414598					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129309724 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	965 bp upstream
Rr133301	regulatory region 133301	1077 bp proximal
Rr399984	regulatory region 399984	1098 bp upstream
Tssr63594	transcription start site region 63594	982 bp upstream
Tssr63595	transcription start site region 63595	970 bp upstream
Tssr63596	transcription start site region 63596	954 bp upstream