rs50415662 SNP Detail

Summary

• ID
  rs50415662
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40517364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTATCTA GGGAATCCAT
  GGCAACTTCA CAGGAGTTTA TTAGTAAATA ATGATACATA AAGTAGCTGA TTCCACACAA
  CCCCATCCCT TCAGCACACC GGAAAGAATT GCATTTTGTA CTCACCCTAT GCAAAACTGT
  GGGAACCTAA GCTAACCTTG CTCACCTTAA TTTTACAAAA ACAATCCTAT GCAATCCCCT
  S
  AAAATAATGT TCTCTTGTGC CTTACCATTT CTCAAACCGT AAGCATACAT TGAATAAATA
  AGAAAGACAC AGAACTCAAT AAACCAAAGA ACCAGGAAAT AGTTGTTGGG TCTTACCTGA
  TTGAAAAATT AGGACAAGAT CAAATCTTTT ATTAGCTCCA CGGTGCTTCC CTGTGGCAGA
  ACTAGGAGAA TGGAAGGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147693539	ENSMUSSNP3658730	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50415662					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40517364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	402 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	181 bp proximal
Rr501589	regulatory region 501589	1078 bp proximal
Rr501590	regulatory region 501590	1641 bp proximal
Tssr4586	transcription start site region 4586	1327 bp upstream
Tssr131170	transcription start site region 131170	913 bp upstream
Tssr131171	transcription start site region 131171	944 bp upstream
Tssr131172	transcription start site region 131172	1026 bp upstream
Tssr131173	transcription start site region 131173	1052 bp upstream
Tssr131174	transcription start site region 131174	1101 bp upstream
Tssr131175	transcription start site region 131175	1240 bp upstream
Tssr131176	transcription start site region 131176	1291 bp upstream
Tssr131177	transcription start site region 131177	1340 bp upstream
Tssr131178	transcription start site region 131178	1369 bp upstream
Zfpm2	zinc finger protein, multitype 2	1074 bp upstream