rs50416952 SNP Detail

Summary

• ID
  rs50416952
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112498155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTTCTG AATTGTTGCG
  ATTTGGGAAG ACTTTCCTAA ATATCATGAG ACATCTTAAA ATGAAACCAA TTGTAAACAC
  AAAATGTGTT TAAGCACATA GCCTGAAGGG AATTCTACAC AGCATCTTAA GCGCACTTAA
  ACTTCAGCTC TGACTTGTCA TACAGGGTCA GATATTGAAT TTTTCCCTTG TGACATCCAA
  S
  ACGTCAATGT TCAGAGCACC TCAGATTTCA GGTCTTTACA GGAGGGAAGG TCACTTTTGA
  GATTGGCCCA TGTCACTTAG TAGAATGCAC TTGGGGCTCA TCTTGACTGT CACACATTGG
  CAGCCTGTTG GGTCTGTCGT TGGGTCATAT TCCACAGTAT AGAGGAACCA GTTTGTTTAT
  CCACTAGCCC ATGGAAGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696541	NES15531968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50416952					SNP	C	C	C	C	C	C	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696541	NES15531968	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112498155 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm48837	predicted gene, 48837	within coordinates
Rr278286	regulatory region 278286	within coordinates
Rr282338	regulatory region 282338	1591 bp proximal
Tssr121108	transcription start site region 121108	1796 bp upstream
Tssr121109	transcription start site region 121109	1825 bp upstream