rs50417508 SNP Detail

Summary

• ID
  rs50417508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142202785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC TGGAGCAGGG GTGGGAAGAG
  R
  CTGTTAGGAA TTATTTTTTA GACTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136014816	ENSMUSSNP4749308	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321002355	CHEV_3_142159988	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50417508					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142202785 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	within coordinates
Rr398084	regulatory region 398084	223 bp downstream
Rr586446	regulatory region 586446	114 bp distal
Rr586447	regulatory region 586447	within coordinates
Rr586448	regulatory region 586448	1971 bp proximal
Tssr32047	transcription start site region 32047	235 bp downstream
Tssr32048	transcription start site region 32048	220 bp downstream
Tssr32049	transcription start site region 32049	194 bp downstream
Tssr32050	transcription start site region 32050	132 bp downstream
Tssr32051	transcription start site region 32051	85 bp downstream