rs50418724 SNP Detail

Summary

• ID
  rs50418724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG GATTTGACTG TGGAGAGTGA
  Y
  AACTTTTCTA ATCTTAGGAC TCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007385	PARCsnp_1.17771	PARC_SEQ	INBRED	f	SNP			C	T
ss120010286	PARCsnp_1.07410	PARC_SEQ	INBRED	f	SNP			C	T
ss146183889	ENSMUSSNP6114868	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320123219	CHEV_1_174138438	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50418724					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035874 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1587 bp downstream
Cpgi1038	CpG island 1038	1354 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1576 bp upstream
Rr396578	regulatory region 396578	767 bp downstream
Rr423485	regulatory region 423485	1514 bp distal
Rr423486	regulatory region 423486	1013 bp distal
Tssr294	transcription start site region 294	1674 bp upstream
Tssr295	transcription start site region 295	1624 bp upstream
Tssr296	transcription start site region 296	1548 bp upstream
Tssr297	transcription start site region 297	1514 bp upstream
Tssr15164	transcription start site region 15164	1642 bp upstream
Tssr15165	transcription start site region 15165	1552 bp upstream
Tssr15166	transcription start site region 15166	1521 bp upstream
Tssr15167	transcription start site region 15167	601 bp upstream
Tssr15168	transcription start site region 15168	1799 bp downstream
Tssr15169	transcription start site region 15169	1886 bp downstream
Tssr15170	transcription start site region 15170	1913 bp downstream
Tssr15171	transcription start site region 15171	1927 bp downstream