rs50418865 SNP Detail

Summary

• ID
  rs50418865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT TTTGAAGTAC TTTTAAAATG
  R
  CATATTTTTA ATACAGGCTT AAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139749538	ENSMUSSNP6047120	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324673211	CHEV_14_75529599	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50418865					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	729 bp proximal
Cpgi6737	CpG island 6737	1302 bp proximal
Gm62951	predicted gene, 62951	578 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1338 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	168 bp proximal
Tssr4477	transcription start site region 4477	835 bp downstream
Tssr126606	transcription start site region 126606	1315 bp upstream
Tssr126607	transcription start site region 126607	1434 bp upstream
Tssr126608	transcription start site region 126608	1481 bp upstream
Tssr126609	transcription start site region 126609	1740 bp upstream
Tssr126610	transcription start site region 126610	1792 bp upstream
Tssr129761	transcription start site region 129761	794 bp downstream
Tssr129762	transcription start site region 129762	816 bp downstream
Tssr129763	transcription start site region 129763	852 bp downstream
Tssr129764	transcription start site region 129764	1116 bp downstream
Tssr129765	transcription start site region 129765	1213 bp downstream
Tssr129766	transcription start site region 129766	1783 bp downstream
Tssr129767	transcription start site region 129767	1825 bp downstream