rs50419566 SNP Detail

Summary

• ID
  rs50419566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59654342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCAGCCC CGTAGCCCAC AGGCTGCGGC AACAGAGCTC
  CTGCATCCTG GAGCCCACAG GCCGCACAGT AACAGTTACA AAATCCCGGA CTCTACAGGT
  Y
  CCTGCAGCGG CAACAGAACT TCTATCCACA CCCACCCCCA GAACCAACAG AGCTCCGGCA
  TTCTGGAGGC CACAGGCCAC ACAGTTAATA GTTCCAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61014586	NES16116699	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	C	C	T	C	C
ss144685590	ENSMUSSNP4563571	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50419566					SNP	T	C	T	T	T	T	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014586	NES16116699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59654342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	within coordinates
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	within coordinates
Rr346	regulatory region 346	446 bp proximal
Rr647544	regulatory region 647544	920 bp distal
Rr647545	regulatory region 647545	within coordinates
Rr647546	regulatory region 647546	445 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr2280	transcription start site region 2280	579 bp downstream
Tssr66968	transcription start site region 66968	896 bp downstream
Tssr66969	transcription start site region 66969	160 bp downstream
Tssr72702	transcription start site region 72702	1599 bp upstream
Tssr72703	transcription start site region 72703	1504 bp upstream
Tssr72704	transcription start site region 72704	1438 bp upstream
Tssr72705	transcription start site region 72705	1408 bp upstream
Tssr72706	transcription start site region 72706	600 bp upstream
Tssr72707	transcription start site region 72707	485 bp downstream
Tssr72708	transcription start site region 72708	507 bp downstream
Tssr72709	transcription start site region 72709	558 bp downstream