rs50421597 SNP Detail

Summary

• ID
  rs50421597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115875618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCACAGAA TTTTATGCGA CTCATCTCAT CCATCTAGAA
  ATCCTGTGAG AAAGGCATTT TGCACTTTAC TAGTGAGGTA ACTTCAGGAC AAGAAGGGTT
  R
  AATGACTTTT TTGAGTCACA CTGGTGGCTG AGGAAGATTC AGACTGCAGT CTTAGTCAAA
  GCAGGTGCTT AACCATTAAG GCTGTATCTG CTGCCTCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147277455	ENSMUSSNP2563225	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321276774	CHEV_4_115691026	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50421597					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115875618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	218 bp distal
Faah	fatty acid amide hydrolase	within coordinates
Rr91643	regulatory region 91643	1783 bp proximal
Rr99792	regulatory region 99792	17 bp distal
Tssr38489	transcription start site region 38489	1138 bp downstream
Tssr42842	transcription start site region 42842	657 bp upstream
Tssr42843	transcription start site region 42843	558 bp upstream
Tssr42844	transcription start site region 42844	387 bp upstream
Tssr42845	transcription start site region 42845	358 bp upstream
Tssr42846	transcription start site region 42846	321 bp upstream
Tssr42847	transcription start site region 42847	290 bp upstream
Tssr42848	transcription start site region 42848	274 bp upstream
Tssr42849	transcription start site region 42849	245 bp upstream