rs50421876 SNP Detail

Summary

• ID
  rs50421876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86145654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATGGAG GTTTTATATG
  TGGATATTTC TTGTTCCCAG CACGCAGACA CAGAGCTGGG GGACTGGTAT TTCAGGGCCA
  GCCTTGGTCA TGTCGTGAGC TTGTTCAGCT GTTGGGATGT TTCGTTTTTA GCAGCTTGCC
  CGGGACACTC CTTGATGTGA TTGTCTGTAT ATCTATTGTG CTGGGATTTG ACAAATTTTT
  Y
  ATATCTGTAG AGTGATGTTT TGGGTTTTAC CAGATTTGGA AATTTCCTCA GATAGTTTTT
  CTCATCCAAG TACTAACCAG ACTAACCCTG CTTAGCTGCC GAGACCAGAA GTGTTCACGG
  TGGTGTGGCC ATAGACCTGA ATGGCTCTTC GTTCCCGTCT CTCTCCTTGT TCTGGAAACC
  ATGGTAGAGG CTTGCTGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52450454	NES15424523	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50421876					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450454	NES15424523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86145654 () rs orientation: forward

Symbol	Name	Function Class
Ift43	intraflagellar transport 43	within coordinates
Rr268782	regulatory region 268782	55 bp distal
Rr268783	regulatory region 268783	1548 bp proximal