rs50422200 SNP Detail

Summary

• ID
  rs50422200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85592612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GAGTGGACAC TCAGACACTC
  Y
  GTGGCATGCC CCATTGTCTC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148271414	ENSMUSSNP6683312	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325042883	CHEV_15_85538841	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50422200					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85592612 () rs orientation: forward

Symbol	Name	Function Class
Gm34622	predicted gene, 34622	460 bp downstream
Lncppara	long noncoding RNA near Ppara	887 bp downstream
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	1008 bp distal
Mirlet7b	microRNA let7b	1008 bp downstream
Mirlet7c-2	microRNA let7c-2	1714 bp downstream
Rr507293	regulatory region 507293	1031 bp distal
Rr507294	regulatory region 507294	107 bp proximal
Rr507295	regulatory region 507295	1099 bp proximal
Rr507296	regulatory region 507296	1972 bp proximal
Rr507297	regulatory region 507297	1998 bp proximal