rs50423219 SNP Detail

Summary

• ID
  rs50423219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52316278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT ACATAGTCTT TGAAAAACTA
  Y
  AAAAGTCAGA TGTAGTGGTA AATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52719787	NES15554375	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	C	C		T	C	C	C		C
ss139500795	ENSMUSSNP1335729	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss324627174	CHEV_14_52698496	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50423219					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52719787	NES15554375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52316278 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Rr289029	regulatory region 289029	323 bp proximal
Tssr128488	transcription start site region 128488	786 bp upstream
Tssr128489	transcription start site region 128489	705 bp downstream
Tssr128490	transcription start site region 128490	1372 bp downstream