rs50424016 SNP Detail

Summary

• ID
  rs50424016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93612574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAC CACCACAAAC CCTATAGTCT
  R
  GTTTGAGCTG ATTTCTAAAC AAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60510886	NES16531465	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G		A	G	A	A
ss325280259	CHEV_16_93815931	CHEVERUD	SCREENING_POP	f	SNP									G					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs50424016					SNP	G	G	G	G	A	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60510886	NES16531465	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93612574 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	226 bp proximal
Rr370142	regulatory region 370142	705 bp upstream
Tssr142206	transcription start site region 142206	702 bp downstream