rs50425075 SNP Detail

Summary

• ID
  rs50425075
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10583001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CGTCCCGTGA TCCTCTGCGC CTGGCCTCTC TGGCCTGCAA
  CGTGTCTCAG GGGCGGAGGC AGCAGCCACG GAGTTGGCTG CGTGAGGGTG GGGGTTCTCA
  G
  TCTCTTCGCT CGCGCCCGTC TCTCTATCGT CGCTCTAGGC GCCCCACGGG CCAACCCAAG
  GCCTCAATAT GTCGTACAAC TACGTCGTAA CGGCGCAGAA G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146043928	ENSMUSSNP7181539	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50425075					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10583001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	within coordinates
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	864 bp downstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	within coordinates
Tkfc	triokinase, FMN cyclase	within coordinates
Tssr155068	transcription start site region 155068	83 bp downstream
Tssr155069	transcription start site region 155069	23 bp downstream
Tssr155070	transcription start site region 155070	within coordinates
Tssr155071	transcription start site region 155071	47 bp upstream
Tssr155072	transcription start site region 155072	282 bp upstream
Tssr155073	transcription start site region 155073	636 bp upstream
Tssr158200	transcription start site region 158200	1322 bp upstream
Tssr158201	transcription start site region 158201	1300 bp upstream
Tssr158202	transcription start site region 158202	1270 bp upstream
Tssr158203	transcription start site region 158203	1240 bp upstream
Tssr158204	transcription start site region 158204	232 bp upstream
Tssr158205	transcription start site region 158205	171 bp upstream
Tssr158206	transcription start site region 158206	167 bp upstream
Tssr158207	transcription start site region 158207	231 bp downstream