rs50426098 SNP Detail

Summary

• ID
  rs50426098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74860974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT CTTTCTTATT TTTTTTTTTT
  W
  ATGTTTATTT TGCTCTCTTA GCGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136638907	ENSMUSSNP1841624	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323007478	CHEV_9_74801499	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50426098					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74860974 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	within coordinates
Cpgi22037	CpG island 22037	109 bp distal
Gm68252	predicted gene, 68252	875 bp upstream
Rr401515	regulatory region 401515	1555 bp downstream
Rr401516	regulatory region 401516	662 bp downstream
Rr683033	regulatory region 683033	1870 bp distal
Rr683034	regulatory region 683034	1956 bp distal
Rr683035	regulatory region 683035	886 bp distal
Rr683036	regulatory region 683036	595 bp distal
Rr683037	regulatory region 683037	within coordinates
Tssr86114	transcription start site region 86114	757 bp downstream
Tssr86115	transcription start site region 86115	601 bp downstream
Tssr86116	transcription start site region 86116	483 bp downstream
Tssr86117	transcription start site region 86117	117 bp downstream