rs50427078 SNP Detail

Summary

• ID
  rs50427078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109555699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCTTGC CCTTGCCCAT
  CCCAACCCTC TCTTCACACT CCATCCTTTC TGACCCCATG CTCCATGTTC TCCAGTCCTG
  CCTCCTACTA TCCACCCTCT CCCTTTTAGA ACAAACCACA AAGTCAGATA ATCTTTTCTT
  CTCTTTATTC ATGGGGCAAA AGCAGGTATG AGTTGGGAAA GCAATGGAAG GACCTCTCCT
  Y
  CCTGTGGCAG TGAGCAGTGG GTCTGGTCAG AGCACTCTTG GCTCCTTGGC ACAGTACTCT
  GGGTATCTGG GGCTTCACCA GTGTCTCTTG GGGGCTCCCT CCTTTATGGA AGGTCTCTGT
  CCCCTGCACT GTCCATATGT CCATTTGGGG AGGGAAAAGG GAGCCCCACT TGGTTGCTAC
  CACCCTTTCT TGGGTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717612	NES17648363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50427078					SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717612	NES17648363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109555699 () rs orientation: forward

Symbol	Name	Function Class
Mir431	microRNA 431	1182 bp upstream
Mir3070a	microRNA 3070a	1234 bp downstream
Mir3070b	microRNA 3070b	585 bp downstream
Mirc43	microRNA cluster 43, including Mir341 through Mir1188	within coordinates
Rtl1	retrotransposon Gaglike 1	within coordinates
Tssr115133	transcription start site region 115133	1258 bp upstream
Tssr115134	transcription start site region 115134	1635 bp upstream