rs50427156 SNP Detail

Summary

• ID
  rs50427156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65109090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACTTAT CATTTTTGTA
  ATAAAAATGG AGACTCATGC AGCAATTGTT GATGAATTCA TTTGGGGAAG GTACACAAAA
  TAGAGATTAA CATTGTCTTG AAGTAAATTT TTCTCTAAAT CTATTATCTT CCTACCAGAA
  TGTTTTAACT GTTTTGGTTT TGTTTCAAGT TCCTGTGCCT TTTAATTTCC ACCATGAAGT
  R
  TTATATTTTT AATGTCCTTG ACAAAGCTAG CCACCTTGAT TAGCAGCTCA ACTCTTGGGA
  CAGAGTCACT AGTTTTTACC TAATTAGAAT ACAGAACACA CAATAAATAA GTCAGTCAAG
  ACAATCCATG ACACTTTTAT TGAGTCTTCT AGTTTACAAG GTAAAAGGAA AGCAGCTCTC
  TGGAATACTT TACATAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss137832458	ENSMUSSNP5909263	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50427156					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65109090 () rs orientation: forward

Symbol	Name	Function Class
Fkbp3	FK506 binding protein 3	116 bp downstream
Prpf39	pre-mRNA processing factor 39	within coordinates
Tssr113604	transcription start site region 113604	582 bp downstream