rs50427292 SNP Detail

Summary

• ID
  rs50427292
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165953020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGGTCTAC ACAAGACTGC CACTCCCTAT CCACACCCTG
  GGGAATGTGG TTTGAATAAG AACTGCTTCT GTAGATTCAC CGTTTGAATG CTTGGGTATC
  M
  GGGAGTGGTA CTAGAGAGGG ATTTTTAGGT GTGGTCTTGC TGCAGGAAGT GTGTCCCTGG
  GGGTGGGCTT TGAGGTTTCA AAAGCTCAAA CCAGGCCCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146013141	ENSMUSSNP5690714	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50427292					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165953020 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	137 bp upstream
Rr28891	regulatory region 28891	780 bp proximal
Rr372394	regulatory region 372394	within coordinates
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9857	transcription start site region 9857	103 bp upstream
Tssr9858	transcription start site region 9858	1538 bp upstream
Tssr14809	transcription start site region 14809	1397 bp downstream
Tssr14810	transcription start site region 14810	1730 bp downstream