rs50427342 SNP Detail

Summary

• ID
  rs50427342
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165469104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTCCCA TCTGTCAGCA
  GAGGCTGCCA CCAAGAAAGC AGTTCAGACT TGAGTTGGGG GCACACTCCC TGGGTGACAG
  CTGTGGGACT GGCCTCACTT CTCTCTCCTC GGTCCCCTCT GCTGGATAGC TTTGTGGAGT
  GGGGAAATGG TTCAGTGGGT AAAGTGCTAT TCACAAGAGT GAGCACCAGA GATCGGATTC
  T
  GGGTGCTCGT ATAAAACTGA GTGAGATGGG GTGTGTTCAG TGTGTGAGCC CAGGGCTGAG
  GTTGGAGACA GGAGGATTCT GGGTGCTCAC TGCCAGCCAG CACTGCTAAT GGATGAACTC
  CAGGTTCAAG AAGAGACCCT GACTCAGACA AGAAAATGGA GGAAGATACC ACATGCTGAC
  CTCTGGCCTC CATGTACACA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148241906	ENSMUSSNP6907744	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50427342					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165469104 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	57 bp distal
Rr569966	regulatory region 569966	764 bp proximal
Rr569967	regulatory region 569967	878 bp proximal