rs50430297 SNP Detail

Summary

• ID
  rs50430297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45568710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG TGGCCCGCTC CCATTCCTCG
  Y
  CACCGTTCCC CAAGCTGGGG GAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002554	NES16125171	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	T	C	C	T	C
ss149150463	ENSMUSSNP6325567	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50430297					SNP	T	C	C	C	C	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002554	NES16125171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45568710 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm72819	predicted gene, 72819	747 bp downstream
Rr400324	regulatory region 400324	1904 bp upstream
Rr646606	regulatory region 646606	1779 bp distal
Rr646607	regulatory region 646607	1298 bp distal
Rr646608	regulatory region 646608	168 bp proximal
Rr646609	regulatory region 646609	1555 bp proximal
Tmem143	transmembrane protein 143	1873 bp downstream
Tssr2256	transcription start site region 2256	1710 bp downstream
Tssr66660	transcription start site region 66660	1233 bp downstream
Tssr72489	transcription start site region 72489	60 bp downstream
Tssr72490	transcription start site region 72490	870 bp downstream
Tssr72491	transcription start site region 72491	1102 bp downstream
Tssr72492	transcription start site region 72492	1341 bp downstream
Tssr72493	transcription start site region 72493	1365 bp downstream
Tssr72494	transcription start site region 72494	1389 bp downstream
Tssr72495	transcription start site region 72495	1395 bp downstream
Tssr72496	transcription start site region 72496	1414 bp downstream
Tssr72497	transcription start site region 72497	1544 bp downstream
Tssr72498	transcription start site region 72498	1825 bp downstream
Tssr72499	transcription start site region 72499	1975 bp downstream