rs50430500 SNP Detail

Summary

• ID
  rs50430500
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79398517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACAGAG GTGTCCTCAG
  AGGTAGAGGG CTAAAGGAAG GAGGGGGGCT TCATTTGGGC CTGCTTCAGA GTTCTGCCAT
  TCCAGCTCAT GGTCCAGACA GCATTTCCTC CTTTTGGGCT GTTATTTAAC CCAAAATATA
  TTTTCAAGAT ACATTTGATG CCATTCAAGA GAATGGAAAA TTTTGAGGAA AAGGAAAATG
  C
  CTCTGTTTCT TGATTCATTT CCCTATTTTA TATGGAAAAA TATTACCTGA AAATAATATA
  GGTATAAAAC AGAGACAAGG ACAAGTATCA GCTTTAAAAA TATTTAATGC TTTATAAAAT
  TTTTAGACAT GGAAAAATAT AAAATATAAA GTAGAGACAT GACCCTCCAT ATCTTTTCCT
  ATTTTTAATT TTATTAATTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146786065	ENSMUSSNP609797	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50430500					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79398517 () rs orientation: forward

Symbol	Name	Function Class
Gm75287	predicted gene, 75287	within coordinates
Rr560005	regulatory region 560005	1217 bp distal
Rr560006	regulatory region 560006	391 bp distal
Rr560007	regulatory region 560007	1525 bp proximal