rs50431449 SNP Detail

Summary

• ID
  rs50431449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31766029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGAACTGG CTTGGGTCCT CTATAAGAGC AATACACACT
  CTTAACTAAA CCATCAATCC AGCTTTTGAT TTGTTTTTTA CTTTCATTAC ATATTTGTGT
  R
  CAAGCACCTT TGCTTGCTGA ACTATCTCAT CACCTCCTTG AGTATTAGTA ACTTTATTTT
  ATTTTTTTTA AGATTTTTTA AAATTTATTT TATTTATATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63012835	NES17430096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50431449					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012835	NES17430096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31766029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	861 bp proximal
Gm58914	predicted gene, 58914	within coordinates
Rr370349	regulatory region 370349	1532 bp upstream
Rr405571	regulatory region 405571	1167 bp upstream
Rr405572	regulatory region 405572	1821 bp upstream
Rr535275	regulatory region 535275	31 bp distal
Rr535276	regulatory region 535276	461 bp distal
Rr535277	regulatory region 535277	413 bp distal
Rr535278	regulatory region 535278	107 bp proximal
Rr535279	regulatory region 535279	1215 bp proximal
Rr535280	regulatory region 535280	1418 bp proximal
Rr535281	regulatory region 535281	1484 bp proximal
Rr535282	regulatory region 535282	1998 bp proximal
Sap130	Sin3A associated protein	1407 bp upstream
Tssr150348	transcription start site region 150348	1340 bp upstream
Tssr150349	transcription start site region 150349	1392 bp upstream
Tssr150350	transcription start site region 150350	1398 bp upstream
Tssr152716	transcription start site region 152716	1793 bp downstream