rs50431579 SNP Detail

Summary

• ID
  rs50431579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30734973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG AACAGAAGTG GAAGTCCTCA
  M
  TGTGACACGC TACAAAGTCT TTAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148696821	ENSMUSSNP4417731	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50431579					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30734973 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	1295 bp upstream
Gm71772	predicted gene, 71772	1441 bp upstream
Rr644978	regulatory region 644978	1190 bp distal
Rr644979	regulatory region 644979	469 bp distal
Rr644980	regulatory region 644980	524 bp distal
Rr644981	regulatory region 644981	1351 bp proximal
Rr644982	regulatory region 644982	1452 bp proximal
Tssr2191	transcription start site region 2191	63 bp upstream
Tssr65830	transcription start site region 65830	280 bp downstream
Tssr65831	transcription start site region 65831	1440 bp upstream
Tssr65832	transcription start site region 65832	1860 bp upstream
Tssr71891	transcription start site region 71891	909 bp downstream
Tssr71892	transcription start site region 71892	1470 bp downstream